Star nf-core / rnaseq RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control. Nextflow 794 669 Built by 14 stars this month
Star nf-core / modules Repository to host tool-specific module files for the Nextflow DSL2 community! Nextflow 257 645 Built by 3 stars this month
Star nf-core / bacass Simple bacterial assembly and annotation pipeline Nextflow 55 36 Built by 4 stars this month
Star nf-core / raredisease Call and score variants from WGS/WES of rare disease patients. Nextflow 74 34 Built by 2 stars this month
Star nf-core / proteomicslfq Proteomics label-free quantification (LFQ) analysis pipeline Nextflow 32 18 Built by 0 stars this month
Star nf-core / sarek Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing Nextflow 346 382 Built by 7 stars this month