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189 public repositories
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A collection of awesome things regarding all omics.
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
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Jun 26, 2024
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Jupyter Notebook
Development repository for the Bioconductor package 'mixOmics '
Visual self-service analytics platform for big omics data.
From geospatial to spatial -omics
Picotti lab data analysis package.
compositional data analysis toolbox
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Dec 15, 2022
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Jupyter Notebook
Prize-Collecting Steiner Forests for Interactomes
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Jun 18, 2024
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Jupyter Notebook
Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
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Jun 18, 2024
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Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
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Mar 2, 2024
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Python
Matrix dissimilarity from the differences of Moments and sparsity
Jigsaw-like AggMap: A Robust and Explainable Multi-Channel Omics Deep Learning Tool
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Apr 2, 2024
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Jupyter Notebook
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
Open-Source Software for Omic Data Analysis and Visualization
An R package to plot interactive three-way differential expression analysis
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Aug 25, 2023
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?? ?? Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
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Jun 10, 2024
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Python
R package for High dimensional data analysis and integration with O2PLS!
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
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Mar 20, 2024
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Julia
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