Here are
107 public repositories
matching this topic...
A collection of awesome things regarding all omics.
Exome/Capture/RNASeq Pipeline Implementation using snakemake
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Updated
Mar 26, 2018
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Python
Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis
Project Manager for NGS data analysis
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Updated
Aug 24, 2022
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Python
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
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Updated
Jun 29, 2023
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Common Workflow Language
Pipelines for NGS data preprocessing by the Bock lab and friends
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Updated
Aug 29, 2022
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Python
Reconstruction and analysis of viral and host genomes at multi-organ level
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Updated
May 29, 2024
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Shell
A fast, easy way to present complex bioinformatics pipelines to biologists
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Sep 28, 2018
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Shell
SARS-CoV-2 Genome Assembler
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Apr 11, 2023
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Shell
A simple fastp-MultiQC nextflow pipeline
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Updated
Feb 2, 2023
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Nextflow
FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2
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Updated
Mar 21, 2024
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Python
Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler
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Updated
Nov 8, 2018
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Python
Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data
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Updated
Dec 23, 2019
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Shell
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
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Dec 19, 2022
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Nextflow
command line and desktop tool for microbial variant calling
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Updated
May 28, 2024
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Jupyter Notebook
scripts associated with yam genome assembly
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May 8, 2020
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Python
Protein Analysis and Classifier Toolkit
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Jan 25, 2022
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Python
Archived code for analyses in "Extensive phylogenomic discordance and the complex evolutionary history of the Neotropical cat genus Leopardus" (Lescroart et al. 2023, MBE)
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Nov 28, 2023
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Python
?? CLinically Okay Metagenomic Pipeline ??
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Updated
Oct 4, 2019
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Python
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