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385 public repositories
matching this topic...
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
A Go package for engineering organisms.
Versatile open-source tool for microbiome analysis
Renderers and renderer extensions for JupyterLab
SeqAn's official repository.
Efficient pythonic random access to fasta subsequences
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Apr 25, 2024
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Python
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
A Java API for high-throughput sequencing data (HTS) formats.
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May 29, 2024
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Java
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
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Jul 7, 2023
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Python
Syntax highlighting for computational biology
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Mar 4, 2023
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Shell
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
Randomly subsample sequencing reads
A collection of scripts and notes related to genomics and bioinformatics
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
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May 27, 2024
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Jupyter Notebook
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
A robust and fast clustering method for amplicon-based studies
?? seqfu - Sequece Fastx Utilities
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
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Apr 16, 2024
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Perl
Software for prediction of plasmid sequences in metagenomic assemblies
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Jun 28, 2021
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Python
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