| Finding motifs in the twilight zone
U Keich, PA Pevzner
Proceedings of the sixth annual international conference on Computational?…
, 2002
| 268
| 2002
|
| Deep RNA sequencing of
L. monocytogenes
reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly?…
HF Oliver, RH Orsi, L Ponnala, U Keich, W Wang, Q Sun, SW Cartinhour, ...
BMC genomics 10, 1-22
, 2009
| 203
| 2009
|
| Designing seeds for similarity search in genomic DNA
J Buhler, U Keich, Y Sun
Proceedings of the seventh annual international conference on Research in?…
, 2003
| 194
| 2003
|
| Target-decoy approach and false discovery rate: when things may go wrong
N Gupta, N Bandeira, U Keich, PA Pevzner
Journal of the American Society for Mass Spectrometry 22, 1111-1120
, 2011
| 179
| 2011
|
| On spaced seeds for similarity search
U Keich, M Li, B Ma, J Tromp
Discrete applied mathematics 138 (3), 253-263
, 2004
| 173
| 2004
|
| Subtle motifs: defining the limits of motif finding algorithms
U Keich, PA Pevzner
Bioinformatics 18 (10), 1382-1390
, 2002
| 88
| 2002
|
| Tandem mass spectrum identification via cascaded search
A Kertesz-Farkas, U Keich, WS Noble
Journal of proteome research 14 (8), 3027-3038
, 2015
| 77
| 2015
|
| Improved false discovery rate estimation procedure for shotgun proteomics
U Keich, A Kertesz-Farkas, WS Noble
Journal of proteome research 14 (8), 3148-3161
, 2015
| 69
| 2015
|
| High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast
I Liachko, RA Youngblood, U Keich, MJ Dunham
Genome research 23 (4), 698-704
, 2013
| 65
| 2013
|
| Improved similarity scores for comparing motifs
E Tanaka, T Bailey, CE Grant, WS Noble, U Keich
Bioinformatics 27 (12), 1603-1609
, 2011
| 64
| 2011
|
| A comprehensive genome-wide map of autonomously replicating sequences in a naive genome
I Liachko, A Bhaskar, C Lee, SCC Chung, BK Tye, U Keich
PLoS genetics 6 (5), e1000946
, 2010
| 62
| 2010
|
| Computing the P-value of the information content from an alignment of multiple sequences
N Nagarajan, N Jones, U Keich
Bioinformatics 21 (suppl_1), i311-i318
, 2005
| 54
| 2005
|
| Genome-wide analysis of bacterial promoter regions
E Eskin, U Keich, MS Gelfand, PA Pevzner
Biocomputing 2003, 29-40
, 2002
| 54
| 2002
|
| On the importance of well-calibrated scores for identifying shotgun proteomics spectra
U Keich, WS Noble
Journal of proteome research 14 (2), 1147-1160
, 2015
| 40
| 2015
|
| GIMSAN: a Gibbs motif finder with significance analysis
P Ng, U Keich
Bioinformatics 24 (19), 2256-2257
, 2008
| 39
| 2008
|
| Averaging strategy to reduce variability in target-decoy estimates of false discovery rate
U Keich, K Tamura, WS Noble
Journal of proteome research 18 (2), 585-593
, 2018
| 38
| 2018
|
| On Lp bounds for Kakeya maximal functions and the Minkowski dimension in ?2
U Keich
Bulletin of the London Mathematical Society 31 (2), 213-221
, 1999
| 35
| 1999
|
| Novel features of ARS selection in budding yeast
Lachancea kluyveri
I Liachko, E Tanaka, K Cox, SCC Chung, L Yang, A Seher, L Hallas, ...
BMC genomics 12, 1-18
, 2011
| 27
| 2011
|
| Improving MEME via a two-tiered significance analysis
E Tanaka, TL Bailey, U Keich
Bioinformatics 30 (14), 1965-1973
, 2014
| 25
| 2014
|
| A generalization of the Ahlswede-Daykin inequality
R Aharoni, U Keich
Discrete Mathematics 152 (1-3), 1-12
, 1996
| 20
| 1996
|